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Tag Archives: metagenomics
A short list of tools for shotgun metagenomics
We are currently finalizing our work on the analysis of metagenomes for soils taken from the Etosha National Park, Namibia. These soils were interesting since Zebra blood containing the nasty bug Bacillus anthracis had poured into it. Our aim was … Continue reading →
Posted in Genomics & more, High-throughput Sequencing, Microbes, software
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Tagged bacteria, metagenomics, microbes, microbial community, microbiology, microbiome, pathogen, science, shotgun sequencing, software, soil
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Gzip vs Bzip2. Some notes when moving files from Windows 7 to Mac OSX
For a metagenomic bioinformatics course I needed to created a Virtual machine (VM) with all software that will be used during the course. For this I started with the QIIME Virtual machine disk , since it has already a nice … Continue reading →
Posted in software
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Tagged commandline, diversity, metagenomics, software, Virtual machine
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